Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs76037795 chr21:38445288 C/G 1.06E-8 175 25 25.87 3.83 KM Plot
PCPG rs7604397 chr2:105680566 G/T 2.05E-6 175 19.2 25.17 25.7 KM Plot
PCPG rs7604723 chr2:24313843 C/T 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs76049479 chr7:158846439 A/G 0.000194 176 25.53 19.87 41.87 KM Plot
PCPG rs76054911 chr6:27285365 C/T 3.08E-8 174 25.67 20.13 18.63 KM Plot
PCPG rs7606989 chr2:24319450 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs76075456 chr16:89834270 T/C 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs7607759 chr2:241536126 A/G 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs76080197 chr18:74532926 C/T 6.45E-9 175 25.6 25.17 10.17 KM Plot
PCPG rs76087798 chr10:131977270 A/G 0 178 25.6 24.23 3.17 KM Plot
PCPG rs76099970 chr7:36187166 C/T 0.000445 177 25.77 24.6 14.37 KM Plot
PCPG rs76147094 chr22:50242192 G/A 0.000161 177 25.53 20.17 15.18 KM Plot
PCPG rs76151170 chr12:56659320 C/T 1.08E-7 177 25.35 26.37 0.8 KM Plot
PCPG rs76165584 chr7:33723528 G/A 1.3E-7 174 25.67 25.43 19.87 KM Plot
PCPG rs76170009 chr7:36170557 C/T 0.000426 177 25.67 24.7 14.37 KM Plot